Grupo de Medicina Xenómica

Publicaciones más relevantes

• SANCHEZ-GRACIA, A., X. MASIDE and B. CHARLESWORTH, 2005 High rate of horizontal transfer of transposable elements in Drosophila. Trends in Genetics 21: 200-203
• MASIDE, X., S. ASSIMACOPOULOS and B. CHARLESWORTH, 2005 Fixation of transposable elements in the Drosophila melanogaster genome. Genetical Research 85: 195-203.
• BARTOLOMÉ, C., X. MASIDE, S. YI, A. L. GRANT and B. CHARLESWORTH, 2005 Patterns of Selection on Synonymous and Nonsynonymous Variants in Drosophila miranda. Genetics 169: 1495-1507.
• MASIDE, X., A. W. LEE and B. CHARLESWORTH, 2004 Selection on Codon Usage in Drosophila americana. Curr Biol 14: 150-154.
• BARTOLOMÉ, C., and X. MASIDE, 2004 The lack of recombination drives the fixation of transposable elements on the fourth chromosome of Drosophila melanogaster. Genetical Research 83: 91-100.
• MASIDE, X., C. BARTOLOMÉ and B. CHARLESWORTH, 2003 Inferences on the evolutionary history of the S- element family of Drosophila melanogaster. Mol Biol Evol 20: 1183-1187.
• MASIDE, X., C. BARTOLOMÉ and B. CHARLESWORTH, 2002 S-element insertions are associated with the evolution of the Hsp70 genes in Drosophila melanogaster. Current Biology 12: 1686-1691.
• BARTOLOMÉ, C., X. MASIDE and B. CHARLESWORTH, 2002 On the abundance and distribution of transposable elements in the genome of Drosophila melanogaster. Mol Biol Evol 19: 926-937.
• MASIDE, X., C. BARTOLOMÉ, S. ASSIMACOPOULOS and B. CHARLESWORTH, 2001 Rates of movement and distribution of transposable elements in Drosophila melanogaster: In situ hybridization vs Southern blotting data. Genetical Research 78: 121-136.
• MASIDE, X., S. ASSIMACOPOULOS and B. CHARLESWORTH, 2000 Rates of movement of transposable elements on the second chromosome of Drosophila melanogaster. Genet Res 75: 275-284.
• NAVEIRA, H. F., and X. MASIDE, 1998 The genetics of hybrid male sterility in Drosophila, pp. 330-338 in Endless forms: species and speciation, edited by D. J. HOWARD and S. H. BERLOCHER. Oxford Universtiy Press, New York.
• MASIDE, X. R., J. P. BARRAL and H. F. NAVEIRA, 1998 Hidden effects of X chromosome introgressions on spermatogenesis in Drosophila simulans x D. mauritiana hybrids unveiled by interactions among minor genetic factors. Genetics 150: 745-754.
• MASIDE, X. R., and H. F. NAVEIRA, 1996 On the difficulties of discriminating between major and minor hybrid male sterility factors in Drosophila by examining the segregation ratio of sterile and fertile sons in backcrossing experiments. Heredity 77: 433-438.
• MASIDE, X. R., and H. F. NAVEIRA, 1996 A polygenic basis of hybrid sterility may give rise to spurious localizations of major sterility factors. Heredity 77: 488-492.
• Loewe L., Charlesworth B., Bartolomé C., Nöel V. 2006 Estimating selection on non-synonymous mutations. Genetics (in press).
• Charlesworth B., Bartolomé, C., Noël V. 2005 The detection of shared and ancestral polymorphisms. Genetical Research 86: 149-157.
• Bartolomé, C., X. Maside, S. Yi, A. L. Grant and B. Charlesworth, 2005 Patterns of Selection on Synonymous and Nonsynonymous Variants in Drosophila miranda. Genetics 169: 1495-1507.
• Charlesworth B., Borthwick H., Bartolomé C., Pignatelli P. 2004 Estimates of the Genomic Mutation Rate for Detrimental Alleles in Drosophila melanogaster. Genetics 167: 815-826, 2004
• Bartolomé, C., and X. Maside, 2004 The lack of recombination drives the fixation of transposable elements on the fourth chromosome of Drosophila melanogaster. Genet. Res. 83: 91-100.
• Maside, X., C. Bartolomé and B. Charlesworth, 2003 Inferences on the evolutionary history of the S-element family of Drosophila melanogaster. Mol. Biol. Evol. 20: 1183-1187.
• Charlesworth, D., C. Bartolomé, M. H. Schierup and B. K. Mable, 2003 Haplotype Structure of the Stigmatic Self-Incompatibility Gene in Natural Populations of Arabidopsis lyrata. Mol. Biol. Evol. 20: 1741-1753.
• Maside, X., C. Bartolomé and B. Charlesworth, 2002 S-element insertions are associated with the evolution of the Hsp70 genes in Drosophila melanogaster. Curr. Biol. 12: 1686-1691.
• Charlesworth D., Mable B.K, Schierup M.H, Bartolomé C., Awadalla P. 2002 Diversity and linkage of genes in the self-incompatibility gene family in Arabidopsis lyrata. Genetics 164: 1519-1535.
• Bartolomé, C., X. Maside and B. Charlesworth, 2002 On the abundance and distribution of transposable elements in the genome of Drosophila melanogaster. Mol. Biol. Evol. 19: 926-937.
• Maside, X., C. Bartolomé, S. Assimacopoulos and B. Charlesworth, 2001 Rates of movement and distribution of transposable elements in Drosophila melanogaster: In situ hybridization vs Southern blotting data. Genet. Res. 78: 121-136.
• Rodríguez-Trelles, F., R. Tarrío, and F.J. Ayala. Models of spliceosomal intron proliferation in the face of widespread ectopic expression. Gene (in press).
• Rodríguez-Trelles, F., R. Tarrío, and F.J. Ayala. Rates of molecular evolution In Evolutionary Genetics: Concepts and Case Studies. Oxford University Press (In press).
• Rodríguez-Trelles, F., R. Tarrío, and F.J. Ayala. Is ectopic expression caused by deregulatory mutations or due to gene-regulation leaks with evolutionary potential? BioEssays 27: 592-601 (2005).
• Butrón, A., Tarrío, R., Revilla, P., A Ordás, and Malvar, R.A. Molecular changes in the maize composite EPS12 across cycles of selection for resistance to pink stem borer. Theoretical and Applied Genetics 11110: 1044-1051 (2005).
• Rodríguez-Trelles, F. Evolutionary genetics: Transcriptome evolution – much ado about nothing? Heredity 93: 405-406 (2004).
• Rodríguez-Trelles, F., R. Tarrío, and F.J. Ayala. Molecular Clocks: whence and whitier? In Telling the Evolutionary Time: Molecular Clocks and the Fossil Record. ISBN: 0415275245; Taylor and Francis Eds.; Londres (2004).
• Rodríguez-Trelles, F., R. Tarrío, and F.J. Ayala. Evolution of cis-regulatory regions versus codifying regions. International Journal of Developmental Biology 4445:665-673 (2003).
• Rodríguez-Trelles, F., R. Tarrío, and F.J. Ayala. Convergent neofunctionalization by positive Darwinian selection after ancient recurrent duplications of the xanthine dehydrogenase gene. Proc. of the Nat. Acad. Sci. USA 100: 13413-13417 (2003).
• Tarrío, R., F. Rodríguez-Trelles, and F. J. Ayala. A new Drosophila spliceosomal intron position is common in Plants. Proc. of the Nat. Acad. Sci. USA 100: 6580-6583 (2003).
• Butrón, A., R. Tarrío, P. Revilla, R.A. Malvar, and A. Ordás. Molecular evaluation of two methods for developing maize synthetic varieties. Molecular Breeding 1112:329-333 (2003).
• Rodríguez-Trelles, F. Seasonal cycles of allozyme-by-chromosomal-inversion gametic disequilibrium in Drosophila subobscura. Evolution 57: 839-848 (2003).
• Rodríguez-Trelles, F., R. Tarrío, and F.J. Ayala. A methodological bias toward overstimation of molecular evolutionary times scales. Proc. of the Nat. Acad. Sci. USA 99: 8112-8115 (2002).
• Torrents, E., P. Aloy, I. Gibert, and F. Rodríguez-Trelles. Ribonucleotide reductases: divergent evolution of an ancient enzyme. Journal of Molecular Evolution 55: 138-152 (2002)
• Rodríguez-Trelles, F., R. Tarrío, and F.J. Ayala. Erratic overdispersion of three molecular clocks: GPDH, SOD, and XDH. Proc. of the Nat. Acad. Sci. USA 98: 11405-11410 (2001).
• Tarrío, R., F. Rodríguez-Trelles, and F. J. Ayala. Shared nucleotide composition biases among species and their impact on phylogenetic reconstructions of the Drosophilidae. Molecular Biology and Evolution 18: 1464-1473 (222001).
• Rodríguez-Trelles, F., R. Tarrío, and F.J. Ayala. Xanthine dehydrogenase (XDH): episodic evolution of a “neutral” protein. Journal of Molecular Evolution 53: 485-495 (2001).
• Rodríguez-Trelles, F., R. Tarrío, and F.J. Ayala. Evidence for a high ancestral GC content in Drosophila. Molecular Biology and Evolution 17: 1710-1717 (2000).
• Tarrío, R., F. Rodríguez-Trelles, and F. J. Ayala. Tree rooting with outgroups when they differ in their nucleotide composition from the ingroup: the Drosophila saltans and willistoni groups, a case study. Molecular Phylogenetics and Evolution 16: 344-349 (2000).
• Rodríguez-Trelles, F., R. Tarrío, and F. J. Ayala. Disparate evolution of paralogous introns in the Xdh gene of Drosophila. Journal of Molecular Evolution 50:123-130 (2000).
• Rodríguez-Trelles, F., R. Tarrío, and F. J. Ayala. Fluctuating mutation bias and the evolution of base composition in Drosophila. Journal of Molecular Evolution 50:1-10 (2000).
• Rodríguez-Trelles, F., L. Alarcón, and A. Fontdevila. Molecular evolution and phylogeny of the buzzatti complex (Drosophyla repleta group): A maximum-likelihood approach. Molecular Biology and Evolution17: 1112-1122 (2000).
• Rodríguez-Trelles, F., R. Tarrío, and F. J. Ayala. Molecular evolution and phylogeny of the Drosophila saltans species group inferred from the Xdh gene. Molecular Phylogenetics and Evolution 13: 110-121 (1999).
• Rodríguez-Trelles, F., R. Tarrío, and F. J. Ayala. Switch in codon bias and increased rates of amino acid substitution in the Drosophila saltans species group. Genetics 153: 339-350 (1999).
• Rodriguez. M. A., and F. Rodriguez-Trelles Evidencias Cientificas del Cambio Climático. Quercus 162: 15-21 (1999).
• Balakirev, E.S., Balakirev, E.I., Rodríguez-Trelles, F., Ayala, F.J. Molecular evolution of two linked genes, Est-6 and Sod, in Drosophila melanogaster. Genetics 153: 1357-1369 (1999).
• Tarrío, R., F. Rodríguez-Trelles, & F. J. Ayala. New Drosophila introns originate by duplication. Proc. of the Nat. Acad. Sci. USA 95: 1658-1662 (1998).
• Bascompte, J., and F. Rodriguez-Trelles. Eradication thresholds in epidemiology, conservation biology and genetics. Journal of Theoretical Biology 192: 415-418 (1998).
• Rodriguez-Trelles, F., M. A. Rodriguez, and S. M. Scheiner .Tracking the genetic effects of global warming: Drosophila and other model systems. Conservation Ecology http://www.consecol.org/vol2/iss2/art2 (1998).
• Rodríguez-Trelles, F., and M. A. Rodríguez. Rapid-microevolution and loss of chromosomal diversity in Drosophila in response to climate warming. Evolutionary Ecology 12: 829-838 (1998).
• Rodríguez-Trelles, F., G. Álvarez, and C. Zapata. Time-series analysis of seasonal changes of the O inversion polymorphism of Drosophila subobscura. Genetics 142: 179- 187 (1996).
• Rodríguez-Trelles F., Weinberg J.R. and Ayala F.J. Presumptive rapid speciation after a founder event in a laboratory population of Nereis: Allozyme electrophoretic evidence does not support hypothesis. Evolution 50: 457-461 (1996).